| RAILWAY | LINE | Km | Linetype |
| A | Top | ||
| Abukyū | Abukuma kyūkō (Abukuma express) | 54.9 | Non JR railway |
| Aichi Kōsoku | Tōbu Kyūryō (Linimo) | 8.9 | Maglev |
| Aikan | Aichi kanjō (Aichi Loop) | 45.3 | Non JR railway |
| Aizu Tetsudō | Aizu | 57.4 | Non JR railway |
| Aketetsu | Akechi | 25.1 | Non JR railway |
| Akita Nairiku | Akita Nairiku | 94.2 | Non JR railway |
| Amagi | Amagi | 13.7 | Non JR railway |
| Aoimori | Aoimori Tetsudō | 25.9 | Non JR railway |
| Arida | Arida * | 5.6 | Non JR railway |
| Asatetsu | Asatō | 8.5 | Non JR railway |
| C | Top | ||
| Chiba Monorail | Town-liner Line 1 (1-gō) | 3.2 | Monorail |
| Town-liner Line 2 (2-gō) | 12.0 | Monorail | |
| Chichibu | Chichibu Hon | 71.7 | Non JR railway |
| Chikuhō Denki | Chikuhō Denki Tetsudō | 16.0 | Non JR railway |
| Chitetsu | Fujikoshi | 3.3 | Non JR railway |
| Hon | 53.3 | Non JR railway | |
| Kamidaki | 12.4 | Non JR railway | |
| Tateyama | 24.2 | Non JR railway | |
| Toyama shinai kidō | 6.4 | Tramway | |
| Toyama toshin (Kanjō) | 0.9 | Tramway | |
| Chizukyū | Chizu | 56.1 | Non JR railway |
| Chōshi | Chōshi Denki Tetsudō | 6.4 | Non JR railway |
| E | Top | ||
| Echizen | Eiheiji | 6.2 | Non JR railway |
| Katsuyama Eiheiji | 27.8 | Non JR railway | |
| Mikuni Awara | 25.2 | Non JR railway | |
| Eiden | Eizan Hon | 5.6 | Non JR railway |
| Kurama | 8.8 | Non JR railway | |
| Enoden | Enoshima dentetsu | 10.0 | Non JR railway |
| Enshū | Enshū Tetsudō | 17.8 | Non JR railway |
| F | Top | ||
| Fujikyū | Fuji kyūkō [Nickname] | Non JR railway | |
| Kawaguchiko | 3.0 | Non JR railway | |
| Ōtsuki | 23.6 | Non JR railway | |
| Fukuoka-shi | Hakozaki (2-gō) | 4.7 | Metro (Subway) |
| Kūkō (1-gō; Airport) | 13.1 | Metro (Subway) | |
| Nanakuma (3-gō) | 12.0 | Metro (Subway) | |
| Fukushima | Iizaka | 9.2 | Non JR railway |
| Fukutetsu | Fukubu (branch) | 0.5 | Tramway |
| Fukubu | 20.9 | Non JR railway | |
| G | Top | ||
| Gakunan | Gakunan Tetsudō | 9.2 | Non JR railway |
| H | Top | ||
| Hakodate-shi | Hōrai - Yachigashira | 1.4 | Tramway |
| Yunokawa - Ōmori - Hon | 9.3 | Tramway | |
| Hakone Tozan | Tetsudō | 15.0 | Non JR railway |
| Hankai | Hankai | 14.1 | Tramway |
| Uemachi | 4.6 | Tramway | |
| Hankyū | Arashiyama | 4.1 | Non JR railway |
| Imazu | 9.3 | Non JR railway | |
| Itami | 3.1 | Non JR railway | |
| Kōbe (Kōbe Hon) | 32.3 | Non JR railway | |
| Kōyō | 2.2 | Non JR railway | |
| Kyōto (Kyōto Hon) | 45.3 | Non JR railway | |
| Minoo | 4.0 | Non JR railway | |
| Senri | 13.6 | Non JR railway | |
| Takarazuka (Takarazuka Hon) | 24.5 | Non JR railway | |
| Hanshin | Hanshin Namba | 10.1 | Non JR railway |
| Hon | 32.1 | Non JR railway | |
| Mukogawa | 1.7 | Non JR railway | |
| Heisei Chikuhō | Ita | 16.1 | Non JR railway |
| Itoda | 6.8 | Non JR railway | |
| Tagawa | 26.3 | Non JR railway | |
| Hiroden | Eba | 2.6 | Tramway |
| Hakushima | 1.2 | Tramway | |
| Hon | 5.4 | Tramway | |
| Minami (Hijiyama) | 2.5 | Tramway | |
| Miyajima | 16.1 | Non JR railway | |
| Ujina | 5.7 | Tramway | |
| Yokogawa | 1.4 | Tramway | |
| Hiroshima Kōsoku | Astram (Hiroshima-Shinkōtsu-Ichigō [1-gō]) | 18.4 | New transit system |
| Hisatsu Orange | Hisatsu Orange Tetsudō | 116.9 | Non JR railway |
| Hitachi | Hitachi * | 18.1 | Non JR railway |
| Hitachinaka Kaihin | Minato | 14.3 | Non JR railway |
| Hōjō | Hōjō | 13.7 | Non JR railway |
| Hokkaidō Chihoku Kōgen | Furusato-Ginga | 140.0 | Non JR railway |
| Hokuetsu | Hokuhoku | 59.5 | Non JR railway |
| Hokushin Kyūkō | Hokushin | 7.5 | Non JR railway |
| Hokusō | Hokusō | 32.3 | Non JR railway |
| Hokutetsu | Asanogawa | 6.8 | Non JR railway |
| Ishikawa | 13.8 | Non JR railway | |
| I | Top | ||
| Ibara | Ibara | 38.3 | Non JR railway |
| Ichibata | Kitamatsue | 33.9 | Non JR railway |
| Taisha | 8.3 | Non JR railway | |
| Iga | Iga | 16.6 | Non JR railway |
| IGR | Iwate Ginga Tetsudō | 82.0 | Non JR railway |
| Isetetsu | Ise | 22.3 | Non JR railway |
| Isumi | Isumi | 26.8 | Non JR railway |
| Iyotetsu | Gunchū | 11.3 | Non JR railway |
| Hanazono | 0.4 | Tramway | |
| Honmachi | 1.5 | Tramway | |
| Jōhoku | 2.8 | Tramway | |
| Jōnan | 3.5 | Tramway | |
| Ōtemachi | 1.4 | Tramway | |
| Takahama | 9.4 | Non JR railway | |
| Yokogawara | 13.2 | Non JR railway | |
| Izu Hakone | Daiyūzan | 9.6 | Non JR railway |
| Sunzu | 19.8 | Non JR railway | |
| Izukyū | Izu Kyūkō | 45.7 | Non JR railway |
| J | Top | ||
| Jōmō | Jōmō | 25.4 | Non JR railway |
| Jōshin | Jōshin | 33.7 | Non JR railway |
| JR Central | Chūō Hon (West) | 174.8 | JR railway |
| Gotemba | 60.2 | JR railway | |
| Iida | 195.7 | JR railway | |
| Kansai Hon | 59.9 | JR railway | |
| Kisei Hon | 180.2 | JR railway | |
| Meishō | 43.5 | JR railway | |
| Minobu | 88.4 | JR railway | |
| Sangū | 29.1 | JR railway | |
| Taita | 17.8 | JR railway | |
| Takayama Hon | 189.2 | JR railway | |
| Taketoyo | 19.3 | JR railway | |
| Tōkaidō Hon (Atami - Maibara) | 341.3 | JR railway | |
| Tōkaidō Hon (Mino-Akasaka branch) | 5.0 | JR railway | |
| Tōkaidō Shinkansen | 515.4 | Shinkansen | |
| JR East | Agatsuma | 55.6 | JR railway |
| Akabane | 5.5 | JR railway | |
| Akita Shinkansen | Shinkansen | ||
| Aterazawa | 24.3 | JR railway | |
| Banetsu-sai | 175.6 | JR railway | |
| Banetsu-tō | 85.6 | JR railway | |
| Chūō - Sōbu kankō [Virtual line] | 60.2 | JR railway | |
| Chūō Hon (East) | 220.8 | JR railway | |
| Chūō Hon (Tatsuno branch) | 27.7 | JR railway | |
| Echigo | 83.8 | JR railway | |
| Gonō | 147.2 | JR railway | |
| Hachikō | 92.0 | JR railway | |
| Hachinohe | 64.9 | JR railway | |
| Hakushin | 27.3 | JR railway | |
| Hanawa | 106.9 | JR railway | |
| Hokuriku Shinkansen [Nickname] | Shinkansen | ||
| Iiyama | 96.7 | JR railway | |
| Ishinomaki | 44.9 | JR railway | |
| Itō | 16.9 | JR railway | |
| Itsukaichi | 11.1 | JR railway | |
| Iwaizumi | 38.4 | JR railway | |
| Jōban | 343.1 | JR railway | |
| Jōetsu | 162.6 | JR railway | |
| Jōetsu Shinkansen (branch) | 1.8 | Shinkansen | |
| Jōetsu Shinkansen | 269.5 | Shinkansen | |
| Kamaishi | 90.2 | JR railway | |
| Karasuyama | 20.4 | JR railway | |
| Kashima | 17.4 | JR railway | |
| Kawagoe | 30.6 | JR railway | |
| Keihin-Tōhoku [Virtual line] | 59.1 | JR railway | |
| Keiyō (Futamata branch) | 5.4 | JR railway | |
| Keiyō (Kōya branch) | 5.9 | JR railway | |
| Keiyō | 43.0 | JR railway | |
| Kesennuma | 72.8 | JR railway | |
| Kitakami | 61.1 | JR railway | |
| Koumi | 78.9 | JR railway | |
| Kururi | 32.2 | JR railway | |
| Mito | 50.2 | JR railway | |
| Musashino | 71.8 | JR railway | |
| Nagano Shinkansen | 117.4 | Shinkansen | |
| Nambu (branch) | 4.1 | JR railway | |
| Nambu | 35.5 | JR railway | |
| Narita (Abiko) | 32.9 | JR railway | |
| Narita (Kūkō Airport) | 10.8 | JR railway | |
| Narita | 75.4 | JR railway | |
| Negishi | 22.1 | JR railway | |
| Nikkō | 40.5 | JR railway | |
| Ōfunato | 105.7 | JR railway | |
| Oga | 26.6 | JR railway | |
| Ōito | 70.1 | JR railway | |
| Ōme | 37.2 | JR railway | |
| Ōminato | 58.4 | JR railway | |
| Ōu Hon (Akita - Aomori) | 185.8 | JR railway | |
| Ōu Hon (Shinjō - Akita) | 150.1 | JR railway | |
| Ōu Hon [Yamagata] (Fukushima - Shinjō ) | 148.6 | JR railway | |
| Rikuu-sai | 43.0 | JR railway | |
| Rikuu-tō | 94.1 | JR railway | |
| Ryōmō | 84.4 | JR railway | |
| Sagami | 33.3 | JR railway | |
| Saikyō [Virtual line] | 36.9 | JR railway | |
| Senseki | 50.2 | JR railway | |
| Senzan | 58.0 | JR railway | |
| Shinetsu Hon (Shinonoi - Niigata) | 220.6 | JR railway | |
| Shinetsu Hon (Takasaki - Yokokawa) | 29.7 | JR railway | |
| Shinonoi | 66.7 | JR railway | |
| Shōnan-Shinjuku Line [Virtual line] | JR railway | ||
| Sōbu Hon (Chiba - Chōshi) | 81.3 | JR railway | |
| Sōbu Hon (Ochanomiya - Kinshichō) | 4.3 | JR railway | |
| Sōbu Hon (Tōkyō - Chiba) | 39.2 | JR railway | |
| Sotobō | 93.3 | JR railway | |
| Suigun (Hitachi-Ōta branch) | 9.5 | JR railway | |
| Suigun | 137.5 | JR railway | |
| Tadami | 135.2 | JR railway | |
| Takasaki | 74.7 | JR railway | |
| Tazawako | 75.6 | JR railway | |
| Tōgane | 13.8 | JR railway | |
| Tōhoku Hon (Akabane - Musashi-Urawa - Ōmiya) | 18.0 | JR railway | |
| Tōhoku Hon (Hachinohe - Aomori) | 96.0 | JR railway | |
| Tōhoku Hon (Kuroiso - Sendai) | 188.5 | JR railway | |
| Tōhoku Hon (Rifu branch) | 4.2 | JR railway | |
| Tōhoku Hon (Sendai - Morioka) | 183.5 | JR railway | |
| Tōhoku Hon (Tōkyō - Kuroiso) | 163.3 | JR railway | |
| Tōhoku Hon (via Oku) | 7.6 | JR railway | |
| Tōhoku Shinkansen | 593.1 | Shinkansen | |
| Tōkaidō Hon (Hinkaku line) | 17.8 | JR railway | |
| Tōkaidō Hon (Tōkyō - Atami) | 104.6 | JR railway | |
| Tsugaru | 55.8 | JR railway | |
| Tsurumi (Ōkawa branch) | 1.0 | JR railway | |
| Tsurumi (Umi-Shibaura branch) | 1.7 | JR railway | |
| Tsurumi | 7.0 | JR railway | |
| Uchibō | 119.4 | JR railway | |
| Uetsu Hon | 271.7 | JR railway | |
| Utsunomiya [Nickname] | JR railway | ||
| Yahiko | 17.4 | JR railway | |
| Yamada | 157.5 | JR railway | |
| Yamagata Shinkansen | Shinkansen | ||
| Yamanote | 20.6 | JR railway | |
| Yokohama | 42.6 | JR railway | |
| Yokosuka | 23.9 | JR railway | |
| Yonesaka | 90.7 | JR railway | |
| JR Hokkaidō | Chitose (Airport branch) | 2.6 | JR railway |
| Chitose | 56.6 | JR railway | |
| Esashi | 79.9 | JR railway | |
| Furano | 54.8 | JR railway | |
| Gakuentoshi [Nickname] | JR railway | ||
| Hakodate Hon (Fujishiro) | 13.2 | JR railway | |
| Hakodate Hon (Sawara) | 35.3 | JR railway | |
| Hakodate Hon | 423.1 | JR railway | |
| Hidaka Hon | 146.5 | JR railway | |
| Kaikyō | 87.8 | JR railway | |
| Muroran Hon (Branch) | 7.0 | JR railway | |
| Muroran Hon | 211.0 | JR railway | |
| Nemuro Hon | 443.8 | JR railway | |
| Rumoi Hon | 66.8 | JR railway | |
| Sasshō | 76.5 | JR railway | |
| Sekihoku Hon | 234.0 | JR railway | |
| Sekishō (Yūbari branch) | 16.1 | JR railway | |
| Sekishō | 132.4 | JR railway | |
| Senmō Hon | 166.2 | JR railway | |
| Sōya Hon | 259.4 | JR railway | |
| JR Kyūshū | Chikuhi (Meinohama - Karatsu) | 42.6 | JR railway |
| Chikuhi (Yamamoto - Imari) | 25.7 | JR railway | |
| Chikuhō Hon | 66.1 | JR railway | |
| Gotōji | 13.3 | JR railway | |
| Hisatsu | 124.2 | JR railway | |
| Hitahikosan | 68.7 | JR railway | |
| Hōhi Hon | 148.0 | JR railway | |
| Ibusuki Makurazaki | 87.8 | JR railway | |
| Kagoshima Hon (Mojikō - Yatsushiro) | 232.3 | JR railway | |
| Kagoshima Hon (Sendai - Kagoshima) | 49.3 | JR railway | |
| Karatsu | 42.5 | JR railway | |
| Kashii | 25.4 | JR railway | |
| Kitto | 61.6 | JR railway | |
| Kyūdai Hon (Yufu Kōgen) | 141.5 | JR railway | |
| Kyūshū Shinkansen | 126.8 | Shinkansen | |
| Misumi | 25.6 | JR railway | |
| Miyazaki-kūkō | 1.4 | JR railway | |
| Nagasaki Hon (Old line) | 23.5 | JR railway | |
| Nagasaki Hon | 125.3 | JR railway | |
| Nichinan | 88.9 | JR railway | |
| Nippō Hon | 462.6 | JR railway | |
| Ōmura | 47.6 | JR railway | |
| Sanyō Hon | 6.3 | JR railway | |
| Sasaguri | 25.1 | JR railway | |
| Sasebo | 48.8 | JR railway | |
| JR Shikoku | Dosan | 198.7 | JR railway |
| Honshi-Bisan | 18.1 | JR railway | |
| Kōtoku | 74.5 | JR railway | |
| Mugi | 79.3 | JR railway | |
| Naruto | 8.5 | JR railway | |
| Tokushima | 67.5 | JR railway | |
| Uchiko | 5.3 | JR railway | |
| Yodo | 76.3 | JR railway | |
| Yosan (1) | 23.5 | JR railway | |
| Yosan (2) | 5.9 | JR railway | |
| Yosan | 297.6 | JR railway | |
| JR West | Akō | 57.4 | JR railway |
| Bantan | 65.7 | JR railway | |
| Biwako [Nickname] | JR railway | ||
| Etsumi-hoku (Kuzuryū) | 52.5 | JR railway | |
| Fukuchiyama | 106.5 | JR railway | |
| Fukuen | 78.0 | JR railway | |
| Gakkentoshi [Nickname] | JR railway | ||
| Gantoku | 43.7 | JR railway | |
| Geibi | 159.1 | JR railway | |
| Hakata Minami | 8.5 | JR railway | |
| Hakubi | 138.4 | JR railway | |
| Hanwa (Hagoromo branch) | 1.7 | JR railway | |
| Hanwa | 61.3 | JR railway | |
| Himi | 16.5 | JR railway | |
| Hokuriku Hon | 353.8 | JR railway | |
| Honshi-Bisan | 12.9 | JR railway | |
| Inbi | 70.8 | JR railway | |
| Jōhana | 29.9 | JR railway | |
| JR Kōbe [Nickname] | JR railway | ||
| JR Kyōto [Nickname] | JR railway | ||
| JR Takarazuka [Nickname] | JR railway | ||
| JR Tōzai | 12.5 | JR railway | |
| Kabe | 14.0 | JR railway | |
| Kakogawa | 48.5 | JR railway | |
| Kansai Hon | 115.0 | JR railway | |
| Kansai Kūkō (Kansai Airport) | 11.1 | JR railway | |
| Katamachi | 44.8 | JR railway | |
| Kibi | 20.4 | JR railway | |
| Kisei Hon | 204.0 | JR railway | |
| Kishin | 158.1 | JR railway | |
| Kisuki | 81.9 | JR railway | |
| Kosei | 74.1 | JR railway | |
| Kure | 87.0 | JR railway | |
| Kusatsu | 36.7 | JR railway | |
| Maizuru | 26.4 | JR railway | |
| Mine | 46.0 | JR railway | |
| Nanao | 59.5 | JR railway | |
| Nara | 34.7 | JR railway | |
| Obama | 84.3 | JR railway | |
| Ōito | 35.3 | JR railway | |
| Onoda (Motoyama branch) | 2.3 | JR railway | |
| Onoda | 11.6 | JR railway | |
| Ōsaka Higashi | 9.2 | JR railway | |
| Ōsaka kanjō (loop) | 20.7 | JR railway | |
| Sagano [Nickname] | JR railway | ||
| Sakai | 17.9 | JR railway | |
| Sakurai | 29.4 | JR railway | |
| Sakurajima | 4.1 | JR railway | |
| Sanin Hon (Senzaki branch) | 2.2 | JR railway | |
| Sanin Hon | 673.8 | JR railway | |
| Sankō | 108.1 | JR railway | |
| Sanyō Hon (Wadamisaki) | 2.7 | JR railway | |
| Sanyō Hon | 528.1 | JR railway | |
| Sanyō Shinkansen | 553.7 | Shinkansen | |
| Takayama Hon | 36.6 | JR railway | |
| Tōkaidō Hon (Maibara - Kōbe) | 143.6 | JR railway | |
| Tōkaidō Hon (Umeda Kamotsu Umeda Freight) | 4.7 | JR railway | |
| Tsuyama | 58.7 | JR railway | |
| Ube | 33.2 | JR railway | |
| Uno | 32.8 | JR railway | |
| Wakayama | 87.5 | JR railway | |
| Yamaguchi | 93.9 | JR railway | |
| Yamatoji [Nickname] | JR railway | ||
| K | Top | ||
| Kagoshima-shi | Dai-ikki (No 1) | 3.0 | Tramway |
| Dai-niki (No 2) | 1.0 | Tramway | |
| Taniyama | 6.4 | Tramway | |
| Toso | 2.7 | Tramway | |
| Kamioka | Kamioka | 19.9 | Non JR railway |
| Kantō | Jōsō | 51.1 | Non JR railway |
| Ryūgasaki | 4.5 | Non JR railway | |
| Kashima | Kashima * | 27.2 | Non JR railway |
| Kashima Rinkai | Ōarai Kashima | 53.0 | Non JR railway |
| Keifuku | Arashiyama Hon (Randen) | 7.2 | Non JR railway |
| Kitano | 3.8 | Non JR railway | |
| Keihan | Ishiyama Sakamoto | 14.1 | Non JR railway |
| Katano | 6.9 | Non JR railway | |
| Keihan Hon | 49.3 | Non JR railway | |
| Keishin | 7.5 | Non JR railway | |
| Nakanoshima | 3.0 | Non JR railway | |
| Ōtō | 2.3 | Non JR railway | |
| Uji | 7.6 | Non JR railway | |
| Keikyū | Daishi | 4.5 | Non JR railway |
| Hon | 56.7 | Non JR railway | |
| Kūkō (Airport) | 6.5 | Non JR railway | |
| Kurihama | 13.4 | Non JR railway | |
| Zushi | 5.9 | Non JR railway | |
| Keiō | Dōbutsuen | 2.0 | Non JR railway |
| Inokashira | 12.7 | Non JR railway | |
| Keibajō | 0.9 | Non JR railway | |
| Keiō | 37.9 | Non JR railway | |
| Keiō Shin | 3.6 | Non JR railway | |
| Sagamihara | 22.6 | Non JR railway | |
| Takao | 8.6 | Non JR railway | |
| Keisei | Chiba | 12.9 | Non JR railway |
| Chihara | 10.9 | Non JR railway | |
| Higashi-Narita | 7.1 | Non JR railway | |
| Hon | 69.3 | Non JR railway | |
| Kanamachi | 2.5 | Non JR railway | |
| Keisei Narita Kūkō (Keisei Narita Airport) | 18.1 | Non JR railway | |
| Narita Sky Access [Virtual line] | Non JR railway | ||
| Oshiage | 5.7 | Non JR railway | |
| Kintetsu | Dōmyōji | 2.2 | Non JR railway |
| Gose | 5.2 | Non JR railway | |
| Hachiōji | 1.3 | Non JR railway | |
| Ikoma | 12.4 | Non JR railway | |
| Kashihara | 23.8 | Non JR railway | |
| Keihanna | 18.8 | Non JR railway | |
| Kyōto | 34.6 | Non JR railway | |
| Minami-Ōsaka | 39.8 | Non JR railway | |
| Nagano | 12.5 | Non JR railway | |
| Nagoya | 78.8 | Non JR railway | |
| Namba | 2.0 | Non JR railway | |
| Nara | 26.7 | Non JR railway | |
| Ōsaka | 108.9 | Non JR railway | |
| Shigi | 2.8 | Non JR railway | |
| Shima | 24.5 | Non JR railway | |
| Suzuka | 8.2 | Non JR railway | |
| Tawaramoto | 10.1 | Non JR railway | |
| Tenri | 4.5 | Non JR railway | |
| Toba | 13.2 | Non JR railway | |
| Utsube | 5.7 | Non JR railway | |
| Yamada | 28.3 | Non JR railway | |
| Yoshino | 25.2 | Non JR railway | |
| Yunoyama | 15.4 | Non JR railway | |
| Kitakinki Tango | Miyafuku | 30.4 | Non JR railway |
| Miyazu | 83.6 | Non JR railway | |
| Kitakyū | Namboku | 5.9 | Non JR railway |
| Kitakyūshū Kōsoku | Kokura | 8.8 | Monorail |
| Kitetsu | Kishū Tetsudō | 2.7 | Non JR railway |
| Kōbe New Transit | Port Island (Portliner) | 8.2 | New transit system |
| Port Island (Portliner [Loop]) | 2.6 | New transit system | |
| Rokkō Island (Rokkōliner) | 4.5 | New transit system | |
| Kōbe Rapid | Namboku | 0.4 | Non JR railway |
| Tōzai (Hankyū Sannomiya - Nishidai) | 5.7 | Non JR railway | |
| Tōzai (Motomachi -Kōsoku Kōbe) | 1.5 | Non JR railway | |
| Kōbe Subway | Kaigan | 7.9 | Metro (Subway) |
| Seishin-Yamate | 22.7 | Metro (Subway) | |
| Kominato | Kominato Tetsudō | 39.1 | Non JR railway |
| Kōnan Tetsudō | Kōnan | 16.8 | Non JR railway |
| Ōwani | 13.9 | Non JR railway | |
| Kotoden | Kotohira | 32.9 | Non JR railway |
| Nagao | 14.6 | Non JR railway | |
| Shido | 12.5 | Non JR railway | |
| Kumaden | Fujisaki | 2.3 | Non JR railway |
| Kikuchi | 10.8 | Non JR railway | |
| Kumagawa | Yunomae | 24.8 | Non JR railway |
| Kumamoto-shi | Kamikumamoto | 2.9 | Tramway |
| Kan | 3.3 | Tramway | |
| Kengun | 3.0 | Tramway | |
| Suizenji | 2.4 | Tramway | |
| Tasaki | 0.6 | Tramway | |
| Kurihara | Kurihara * | 25.7 | Non JR railway |
| Kurobe Gorge | Hon | 20.1 | Non JR railway |
| Kyōto-shi | Karasuma | 13.7 | Metro (Subway) |
| Tōzai | 17.5 | Metro (Subway) | |
| M | Top | ||
| Maihama Resort | Disney Resort | 5.0 | Monorail |
| Manyō | Shinminatokō | 4.9 | Non JR railway |
| Takaoka kidō | 7.9 | Tramway | |
| Matsumoto | Kamikōchi | 14.4 | Non JR railway |
| Matsuura | Nishi-kyūshū | 93.8 | Non JR railway |
| Meitetsu | Bisai | 30.9 | Non JR railway |
| Chikkō | 1.5 | Non JR railway | |
| Chita Shin | 13.9 | Non JR railway | |
| Gamagōri | 17.6 | Non JR railway | |
| Gifu Shinai | 3.7 | Tramway | |
| Hashima | 1.3 | Non JR railway | |
| Hiromi | 22.3 | Non JR railway | |
| Inuyama | 26.8 | Non JR railway | |
| Inuyama Monorail | 1.2 | Monorail | |
| Kakamigahara | 17.6 | Non JR railway | |
| Komaki | 20.6 | Non JR railway | |
| Kōwa | 28.8 | Non JR railway | |
| Kūkō (Airport) | 4.2 | Non JR railway | |
| Mikawa | 39.8 | Non JR railway | |
| Minomachi | 18.8 | Non JR railway | |
| Nagoya Hon | 99.8 | Non JR railway | |
| Nishio | 24.7 | Non JR railway | |
| Seto | 20.6 | Non JR railway | |
| Tagami | 1.4 | Non JR railway | |
| Takehana | 10.3 | Non JR railway | |
| Tokoname | 29.3 | Non JR railway | |
| Toyokawa | 7.2 | Non JR railway | |
| Toyota | 15.2 | Non JR railway | |
| Tsushima | 11.8 | Non JR railway | |
| Miki | Miki | 6.6 | Non JR railway |
| Minami-Aso | Takamori | 17.7 | Non JR railway |
| MIR | Tsukuba Express | 58.3 | Non JR railway |
| Mizuma | Mizuma | 5.5 | Non JR railway |
| Mizushima Rinkai | Mizushima Hon | 10.4 | Non JR railway |
| Mōka | Mōka | 41.9 | Non JR railway |
| N | Top | ||
| Nagaden | Katō (Kijima) | 12.9 | Non JR railway |
| Nagano (Hon) | 33.2 | Non JR railway | |
| Yashiro | 24.4 | Non JR railway | |
| Nagasaki | Akasako | 0.4 | Tramway |
| Hon | 6.9 | Tramway | |
| Hotarujaya | 2.2 | Tramway | |
| Ōura | 1.1 | Tramway | |
| Sakuramachi | 0.9 | Tramway | |
| Nagatetsu | Etsumi-nan | 72.1 | Non JR railway |
| Nagoya Rinkai | Aonami [Nickname] | Non JR railway | |
| Nishi-Nagoyakō | 15.2 | Non JR railway | |
| Nagoya-shi | Higashiyama | 20.6 | Metro (Subway) |
| Kamiiida | 0.8 | Metro (Subway) | |
| Meijō | 26.4 | Metro (Subway) | |
| Meikō | 6.0 | Metro (Subway) | |
| Sakuradōri | 14.9 | Metro (Subway) | |
| Tsurumai | 20.4 | Metro (Subway) | |
| Nankai | Kada | 9.6 | Non JR railway |
| Kōya (Shiomibashi) | 4.6 | Non JR railway | |
| Kōya | 59.9 | Non JR railway | |
| Kūkō (Airport) | 8.8 | Non JR railway | |
| Nankai Hon | 64.2 | Non JR railway | |
| Takashinohama | 1.5 | Non JR railway | |
| Tanagawa | 2.6 | Non JR railway | |
| Wakayamakō | 2.8 | Non JR railway | |
| Nishikigawa | Nishikigawa Seiryū | 32.7 | Non JR railway |
| Nishitetsu | Amagi | 17.9 | Non JR railway |
| Dazaifu | 2.4 | Non JR railway | |
| Kaizuka (Ex Miyajidake) | 11.0 | Non JR railway | |
| Tenjin Ōmuta | 74.8 | Non JR railway | |
| Noseden | Myōken | 12.2 | Non JR railway |
| Nissei | 2.6 | Non JR railway | |
| Noto | Nanao | 28.0 | Non JR railway |
| Noto | 61.0 | Non JR railway | |
| O | Top | ||
| Odakyū | Enoshima | 27.6 | Non JR railway |
| Odawara | 82.5 | Non JR railway | |
| Tama | 10.6 | Non JR railway | |
| Ōigawa | Ikawa | 25.5 | Non JR railway |
| Ōigawa Hon | 39.5 | Non JR railway | |
| Okaden | Higashiyama (Hon) | 3.1 | Tramway |
| Seikibashi | 1.6 | Tramway | |
| Okinawa Monorail | Okinawa Toshi Monorail (Yui Rail) | 12.8 | Monorail |
| Ōmi | Hon | 47.7 | Non JR railway |
| Taga | 2.5 | Non JR railway | |
| Yōkaichi | 9.3 | Non JR railway | |
| Ōsaka Monorail | Kokusai-bunka-kōen-toshi | 6.8 | Monorail |
| Ōsaka monorail | 21.2 | Monorail | |
| Saito [Nickname] | Monorail | ||
| Ōsaka-shi | Chūō | 17.9 | Metro (Subway) |
| Imazatosuji | 11.9 | Metro (Subway) | |
| Midōsuji | 24.5 | Metro (Subway) | |
| Nagahori Tsurumi-ryokuchi | 15.0 | Metro (Subway) | |
| Nankō Port Town | 7.9 | New transit system | |
| Sakaisuji | 8.5 | Metro (Subway) | |
| Sennichimae | 13.1 | Metro (Subway) | |
| Tanimachi | 28.1 | Metro (Subway) | |
| Yotsubashi | 11.4 | Metro (Subway) | |
| OTK | Semboku Kōsoku Tetsudō | 14.3 | Non JR railway |
| R | Top | ||
| Ryūtetsu | Nagareyama | 5.7 | Non JR railway |
| S | Top | ||
| Sagano Scenic | Sagano Kankō | 7.3 | Tourist |
| Saitama | Saitama Kosoku Tetsudō | 14.6 | Non JR railway |
| Saitama Shin-toshi | Ina (Nyū Shatoru New Shuttle) | 12.7 | New transit system |
| Sangi | Hokusei | 20.4 | Non JR railway |
| Sangi | 26.6 | Non JR railway | |
| Santetsu | Kita Rias | 71.0 | Non JR railway |
| Minami Rias | 36.6 | Non JR railway | |
| Sanyō Dentetsu | Aboshi | 8.5 | Non JR railway |
| Hon | 54.7 | Non JR railway | |
| Sapporo-shi | Ichijō-Yamahana | 8.4 | Tramway |
| Namboku | 14.3 | Metro (Subway) | |
| Tōhō | 13.6 | Metro (Subway) | |
| Tōzai | 20.1 | Metro (Subway) | |
| Seibu | Chichibu | 19.0 | Non JR railway |
| Haijima | 14.3 | Non JR railway | |
| Ikebukuro | 57.8 | Non JR railway | |
| Kokubunji | 7.8 | Non JR railway | |
| Sayama | 4.2 | Non JR railway | |
| Seibuen | 2.4 | Non JR railway | |
| Shinjuku | 47.5 | Non JR railway | |
| Tamagawa | 8.0 | Non JR railway | |
| Tamako | 9.2 | Non JR railway | |
| Toshima | 1.0 | Non JR railway | |
| Yamaguchi | 2.8 | New transit system | |
| Yūrakuchō | 2.6 | Non JR railway | |
| Sendai Airport Transit | Sendai Kūkō | 7.1 | Non JR railway |
| Sendai-shi | Namboku | 14.8 | Metro (Subway) |
| Shared | Seto-Ōhashi [Nickname] | JR railway | |
| Tsugaru-Kaikyō [Nickname] | JR railway | ||
| Shibayama | Shibayama Tetsudō | 2.2 | Non JR railway |
| Shigaraki Kōgen | Shigaraki | 14.7 | Non JR railway |
| Shimabara | Shimabara Tetsudō | 43.2 | Non JR railway |
| Shimokita Kōtsū | Ōhata | 18.0 | Non JR railway |
| Shinano | Shinano Tetsudō | 65.1 | Non JR railway |
| Shin-Keisei | Shin-Keisei | 26.5 | Non JR railway |
| Shintetsu | Ao | 29.2 | Non JR railway |
| Arima | 22.5 | Non JR railway | |
| Kōentoshi | 5.5 | Non JR railway | |
| Sanda | 12.0 | Non JR railway | |
| Shizuoka | Shizuoka-Shimizu | 11.0 | Non JR railway |
| Shōnan Monorail | Enoshima | 6.6 | Monorail |
| Skyrail | Hiroshima Tankyori Kōtsū Seno (Skyrail Midorizaka) | 1.3 | New transit system |
| Sōtetsu | Hon | 24.6 | Non JR railway |
| Izumino | 11.3 | Non JR railway | |
| T | Top | ||
| Takachiho | Takachiho | 50.0 | Non JR railway |
| Tama Monorail | Tama Toshi Monorēru | 16.0 | Monorail |
| Tarumi | Tarumi | 34.5 | Non JR railway |
| Tenryū Hamanako | Tenryū Hamanako | 67.7 | Non JR railway |
| TKJ | Jōhoku | 11.2 | Non JR railway |
| Tōbu | Daishi | 1.0 | Non JR railway |
| Isesaki (Oshiage) | 1.3 | Non JR railway | |
| Isesaki | 114.5 | Non JR railway | |
| Kameido | 3.4 | Non JR railway | |
| Kinugawa | 16.2 | Non JR railway | |
| Kiryū | 20.3 | Non JR railway | |
| Koizumi (1) | 12.0 | Non JR railway | |
| Koizumi (2) | 6.4 | Non JR railway | |
| Nikkō | 94.5 | Non JR railway | |
| Noda | 62.7 | Non JR railway | |
| Ogose | 10.9 | Non JR railway | |
| Sano | 22.1 | Non JR railway | |
| Tōjō Hon | 75.0 | Non JR railway | |
| Utsunomiya | 24.3 | Non JR railway | |
| TOEI | Asakusa | 18.3 | Metro (Subway) |
| Mita | 24.2 | Metro (Subway) | |
| Nippori-Toneri Liner | 9.7 | New transit system | |
| Ōedo | 40.7 | Metro (Subway) | |
| Shinjuku | 23.5 | Metro (Subway) | |
| Toden Arakawa | 12.2 | Tramway | |
| Tōkadai | Tōkadai | 7.4 | New transit system |
| Tōkyō Metro | Chiyoda (Kita-Ayase branch) | 2.1 | Metro (Subway) |
| Chiyoda | 21.9 | Metro (Subway) | |
| Fukutoshin | 20.2 | Metro (Subway) | |
| Ginza | 14.3 | Metro (Subway) | |
| Hanzōmon | 16.8 | Metro (Subway) | |
| Hibiya | 20.3 | Metro (Subway) | |
| Marunouchi (1) | 24.2 | Metro (Subway) | |
| Marunouchi (2) | 3.2 | Metro (Subway) | |
| Namboku | 21.3 | Metro (Subway) | |
| Tōzai | 30.8 | Metro (Subway) | |
| Yūrakuchō | 20.0 | Metro (Subway) | |
| Tōkyō Monorail | Tōkyō Monorail Haneda | 17.8 | Monorail |
| Tōkyū | Den'en-toshi | 31.5 | Non JR railway |
| Ikegami | 10.9 | Non JR railway | |
| Meguro | 6.5 | Non JR railway | |
| Ōimachi | 10.4 | Non JR railway | |
| Setagaya | 5.0 | Tramway | |
| Tōkyū Tamagawa | 5.6 | Non JR railway | |
| Tōyoko | 24.2 | Non JR railway | |
| Tosa Kuroshio | Asa (Gomen-Nahari) | 42.7 | Non JR railway |
| Nakamura | 43.0 | Non JR railway | |
| Sukumo | 23.6 | Non JR railway | |
| Tosaden | Gomen | 10.9 | Tramway |
| Ino | 11.2 | Tramway | |
| Sanbashi | 3.2 | Tramway | |
| Towadakankō | Towadakankō Dentetsu | 14.7 | Non JR railway |
| Toyama Light Rail | Toyamakō (Portram) | 7.6 | Non JR railway |
| Tōyō Kōsoku | Tōyō Kōsoku | 16.2 | Non JR railway |
| Toyotetsu | Atsumi | 18.0 | Non JR railway |
| Azumada Hon (branch) | 0.6 | Tramway | |
| Azumada Hon (Shinai) | 4.8 | Tramway | |
| Tsutetsu | Tsugaru Tetsudō | 20.7 | Non JR railway |
| TWR | Rinkai | 12.2 | Non JR railway |
| U | Top | ||
| Ueda | Bessho | 11.6 | Non JR railway |
| W | Top | ||
| Wakasa | Wakasa | 19.2 | Non JR railway |
| Wakayama Dentetsu | Kishigawa | 14.3 | Non JR railway |
| Watetsu | Watarase Keikoku | 44.1 | Non JR railway |
| Y | Top | ||
| Yagan | Aizu-Kinugawa | 30.7 | Non JR railway |
| Yamagata | Flower (Furawa) Nagai | 30.5 | Non JR railway |
| Yamaman | Yūkarigaoka | 4.1 | New transit system |
| Yokohama Kōsoku | Kodomonokuni | 3.4 | Non JR railway |
| Minatomirai21 | 4.1 | Non JR railway | |
| Yokohama Shin-toshi | Kanazawa Seaside | 10.6 | New transit system |
| Yokohama Subway | Blue - Line 1 | 19.7 | Metro (Subway) |
| Blue - Line 3 | 20.7 | Metro (Subway) | |
| Green - Line 4 | 13.0 | Metro (Subway) | |
| Yōrō | Yōrō | 57.5 | Non JR railway |
| Yuri Kōgen | Chōkaisanroku | 23.0 | Non JR railway |
| Yurikamome | Yurikamome | 14.7 | New transit system |
